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Registro Completo |
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Biblioteca(s): |
Embrapa Florestas. |
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Data corrente: |
18/03/2011 |
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Data da última atualização: |
22/03/2011 |
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Autoria: |
FIGUEIREDO FILHO, A.; DIAS, A. N.; KOEHLER, S. V.; VERUSSA, A. A.; CHIQUETTO, A. L. |
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Título: |
Evolution of the hypsometric relationship in Araucaria angustifolia plantations in the mid-south region of Paraná state. |
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Ano de publicação: |
2010 |
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Fonte/Imprenta: |
Cerne, Lavras, v. 16, n. 3, p. 347-357, jul./set. 2010. |
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Idioma: |
Inglês |
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Palavras-Chave: |
H/d curve; Paraná Pine; Stem analysis. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 00598naa a2200193 a 4500
001 1881572
005 2011-03-22
008 2010 bl uuuu u00u1 u #d
100 1 $aFIGUEIREDO FILHO, A.
245 $aEvolution of the hypsometric relationship in Araucaria angustifolia plantations in the mid-south region of Paraná state.
260 $c2010
653 $aH/d curve
653 $aParaná Pine
653 $aStem analysis
700 1 $aDIAS, A. N.
700 1 $aKOEHLER, S. V.
700 1 $aVERUSSA, A. A.
700 1 $aCHIQUETTO, A. L.
773 $tCerne, Lavras$gv. 16, n. 3, p. 347-357, jul./set. 2010.
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Registro original: |
Embrapa Florestas (CNPF) |
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Registro Completo
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
18/11/2020 |
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Data da última atualização: |
18/11/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
PADILHA, L.; CAIXETA, E. T.; SILVA, F. R. da. |
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Afiliação: |
LILIAN PADILHA, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; FELIPE RODRIGUES DA SILVA, CNPTIA. |
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Título: |
Comparing methods of RNAseq analysis for species without a reference genome. |
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Ano de publicação: |
2012 |
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Fonte/Imprenta: |
In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTACIONAL BIOLOGY, 8., 2012, Campinas, São Paulo. Resumos... Campinas, SP, 2012. |
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Idioma: |
Inglês |
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Notas: |
X-MEETING. |
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Conteúdo: |
New sequencing technologies brought deep probing of transcriptomes (so-called RNAseq) to the reach of individual researches. Analysis of RNAseq sequences, however, depend on the alignment of reads to a reference genome. Some approaches have been proposed to allow de novo assembly of the transcripts, therefore allowing RNAseq to be used on organisms lacking a reference genome. The efficiency of those approaches, however, were tested only with diploid species. Here we propose a methodology to evaluate the results of de novo assembly of allotetraploid Coffea arabica RNAseq reads obtained from libraries of coffee leaves infected by Hemileia vastatrix. Trinity was able to assemble longer transcripts when compared to ABySS, SOAPdenovo and Oases. Moreover, the transcripts assembled by Trinity where more similar to the ones obtained using Cufflinks after aligning the RNAseq to 10 Coffea sp. publically available BAC sequences. Comparison of the most abundant transcripts with several Coffea sp. single copy described genes, though, shows that all assemblers failed to perfectly reconstruct the transcripts. |
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Thesagro: |
Coffea Arábica; Genoma. |
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Thesaurus NAL: |
Transcriptome. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/217932/1/2012-Resumo-Xmeeting.pdf
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Marc: |
LEADER 01751nam a2200181 a 4500
001 2126751
005 2020-11-18
008 2012 bl uuuu u00u1 u #d
100 1 $aPADILHA, L.
245 $aComparing methods of RNAseq analysis for species without a reference genome.$h[electronic resource]
260 $aIn: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTACIONAL BIOLOGY, 8., 2012, Campinas, São Paulo. Resumos... Campinas, SP$c2012
500 $aX-MEETING.
520 $aNew sequencing technologies brought deep probing of transcriptomes (so-called RNAseq) to the reach of individual researches. Analysis of RNAseq sequences, however, depend on the alignment of reads to a reference genome. Some approaches have been proposed to allow de novo assembly of the transcripts, therefore allowing RNAseq to be used on organisms lacking a reference genome. The efficiency of those approaches, however, were tested only with diploid species. Here we propose a methodology to evaluate the results of de novo assembly of allotetraploid Coffea arabica RNAseq reads obtained from libraries of coffee leaves infected by Hemileia vastatrix. Trinity was able to assemble longer transcripts when compared to ABySS, SOAPdenovo and Oases. Moreover, the transcripts assembled by Trinity where more similar to the ones obtained using Cufflinks after aligning the RNAseq to 10 Coffea sp. publically available BAC sequences. Comparison of the most abundant transcripts with several Coffea sp. single copy described genes, though, shows that all assemblers failed to perfectly reconstruct the transcripts.
650 $aTranscriptome
650 $aCoffea Arábica
650 $aGenoma
700 1 $aCAIXETA, E. T.
700 1 $aSILVA, F. R. da
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Embrapa Café (CNPCa) |
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